Shola forest landscape in the Western Ghats

Bharata Mata College (Autonomous), Kochi

ORiGIN Lab

Organismal Research in Genomics, Integrative Systematics and Natural History

Tracing biodiversity from landscape to lineage.

ORiGIN Lab investigates how species arise, diversify and persist using field biology, morphology, molecular data, museum collections and evolutionary analysis.

Organisms • Genomes • Landscapes

Understanding diversity across space and time

The laboratory integrates field research, natural history, morphology, systematics, molecular phylogenetics, phylogenomics and museum collections.

About ORiGIN Lab

Research programme

Four connected research themes

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S

Recognising overlooked diversity

Systematics & Species Discovery

Comparative morphology, diagnostic characters, taxonomic revision and integrative species delimitation.

G

Reconstructing evolutionary history

Phylogenetics & Phylogenomics

Evolutionary relationships inferred using multilocus and genome-scale data, with explicit attention to uncertainty and concordance.

B

Connecting lineages and landscapes

Historical Biogeography

Testing how vicariance, dispersal, climate and geological history shaped present-day organismal distributions.

C

Evidence from specimens and deep time

Collections, Fossils & Imaging

Connecting modern biodiversity with museum specimens, fossil inclusions, microscopy and non-destructive imaging.

TerraEvo framework

From landscape to lineage

Earth history, geographic barriers, habitat structure and dispersal limitation influence how lineages originate, diversify and persist.

How does geography structure evolutionary diversity?
How can overlooked species be recognised?
What can low-dispersal arthropods reveal about deep time?

Research process

Evidence moves from field to synthesis

01

Field sampling

Habitat, locality and specimen documentation.

02

Morphology & imaging

Microscopy, diagnostic structures and comparative characters.

03

Molecular data

DNA barcodes, multilocus datasets and genomic evidence.

04

Evolutionary analysis

Phylogeny, dating, concordance and biogeographic inference.

05

Open outputs

Publications, datasets, collections and conservation evidence.

Selected programmes

Featured projects

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In press / ongoing synthesis

Integrative Revision of Western Ghats Tyrannochthoniini

An integrative taxonomic and biogeographic revision combining morphology, molecular evidence and evolutionary analyses to resolve poorly known Western Ghats pseudoscorpion diversity.

OrganismsPseudoscorpiones: Tyrannochthoniini
GeographyWestern Ghats, India
MorphometricsMultilocus phylogeneticsSpecies delimitationHistorical biogeography
Proposed research programme

Multi-lineage UCE Phylogenomics in the Western Ghats

A comparative framework designed to test whether different low-dispersal pseudoscorpion lineages preserve concordant geographic and evolutionary signals.

OrganismsTyrannochthoniini, litter Atemnidae and Geogarypidae
GeographyWestern Ghats, India
Ultraconserved elementsSpecies-tree inferenceDivergence datingBiogeographic modelling
Planned international collaboration

Comparative Tyrannochthonius Systematics

Comparative study of North American and East Asian lineages using museum collections, morphology, molecular evidence and phylogenomic approaches.

OrganismsTyrannochthonius and allied pseudoscorpions
GeographyNorth America and East Asia
Museum collectionsIntegrative taxonomyUCE phylogenomicsComparative biogeography
Conservation research programme

Western Ghats Tarantula Conservation

Field-based research supporting distributional baselines, habitat documentation and conservation assessment for threatened and poorly known Western Ghats tarantulas.

OrganismsTheraphosidae
GeographySouthern Western Ghats, India
Burrow surveysHabitat documentationCamera trappingConservation assessment

Research outputs

Selected publications

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2026

A new species of Mundochthonius Chamberlin, 1929 from Tsushima Island, Japan with notes on cryptic diversity and biogeography of the Japanese Archipelago

Jeong K-H, Oh J, Shida R, Johnson J, Harms D & Kim S

Evolutionary Systematics 10(2): 263–274

DOI: 10.3897/evolsyst.10.199765

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2024

A new species of Ditha from the Western Ghats of India, with an identification key for the genus

Jeong K-H, Harms D & Johnson J

Zoosystematics and Evolution 100(1): 1–8

DOI: 10.3897/zse.100.110020

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2023

First record of the pseudoscorpion tribe Tyrannochthoniini from mid-Cretaceous Burmese amber of northern Myanmar

Johnson J, Loria SF, Kotthoff U, Hammel JU, Joseph MM & Harms D

Cretaceous Research 144: 105459

DOI: 10.1016/j.cretres.2022.105459

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2022

Biogeographical and diversification analyses of Indian pseudoscorpions reveal the Western Ghats as museums of ancient biodiversity

Johnson J, Loria SF, Joseph MM & Harms D

Molecular Phylogenetics and Evolution 175: 107495

DOI: 10.1016/j.ympev.2022.107495

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JJ

Principal investigator

Dr. Jithin Johnson, FLS

Assistant Professor · Department of Zoology, Bharata Mata College (Autonomous)

Jithin is an evolutionary biologist and arachnologist working on pseudoscorpion systematics, Western Ghats biogeography, phylogenomics, integrative taxonomy, fossil arachnids and invertebrate conservation.

  • Pseudoscorpion systematics
  • Historical biogeography
  • Phylogenomics
  • Integrative taxonomy
  • Fossil arachnids
  • Invertebrate conservation

Updates and coverage

Latest news & media

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Institutional News

18 February 2026

Elected Fellow of the Linnean Society of London

Bharata Mata College

The college announced Dr. Jithin Johnson’s election as a Fellow of the Linnean Society of London.

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Institutional News

30 January 2026

Grant support for an international workshop on soil arachnids

Bharata Mata College

Institutional announcement of grant support for an international workshop on evolutionary systematics of soil arachnids.

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Conference

2026

Arachnid Systematics of the Oriental and Indo-Pacific Regions

23rd International Congress of Arachnology

A symposium on integrative taxonomy, molecular systematics, phylogenomics and conservation coordinated by Dr. Jithin Johnson and Dr. Stephanie F. Loria.

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Collaboration

Work with ORiGIN Lab

Expressions of interest are welcome from students, researchers, museums and institutions working in organismal biology, systematics, genomics and natural history.